OpenSim (simulation toolkit)

Quantum ESPRESSO is a free, open-source software package for electronic structure calculations and m (more)aterials modeling, based on density functional theory (DFT). It is a powerful tool for predicting the properties of materials and molecules using first-principles calculations, which are based on the fundamental laws of quantum mechanics. Quantum ESPRESSO includes a suite of programs for performing calculations on periodic systems, such as crystals and molecules, as well as on isolated systems, such as atoms and clusters. It can be used to predict a wide range of properties, including electronic structure, phonon dispersion, and optical spectra. Quantum ESPRESSO is widely used in the fields of physics, chemistry, and materials science, and it is distributed under the GNU General Public License (GPL). It is available for a variety of platforms, including Windows, macOS, and Linux, and it can be downloaded from the Quantum ESPRESSO website. Operating system: Linux macOS License: GNU General Public License

Operating system: Unix/Linux, Windows, Mac License: GNU Affero General Public License, optional comm (more)ercial license (based on MIT License)

The Euler Math Toolbox (EMT) is a software package for numerical and symbolic computation. It is des (more)igned to be a powerful tool for solving a wide range of mathematical problems, including linear and nonlinear algebra, optimization, and ordinary and partial differential equations. The EMT is written in the programming language C++, and it is available for Windows, Linux, and macOS. It includes a graphical user interface (GUI) for interacting with the software, as well as a command-line interface for scripting and automation. It is widely used in academia and industry, and it is particularly well-suited for applications in engineering, physics, and finance. In addition to its mathematical and computational capabilities, the EMT also includes a variety of visualization tools for creating plots and charts, and for animating and interactively exploring data. It is developed and maintained by a team of researchers and developers at the Technical University of Berlin, and it is distributed under the GNU General Public License (GPL). Operating system: Windows, Linux License: General Public License

GenePattern is a software platform for analyzing and interpreting genomic data. It is a web-based to (more)ol that provides a range of tools and algorithms for tasks such as gene expression analysis, DNA sequence analysis, and genetic variation analysis. GenePattern is designed to be a user-friendly platform for working with large-scale genomic data, and it includes features such as a graphical user interface (GUI) for accessing tools and data, as well as support for command-line interface (CLI) and programmatic access to tools and data. It is widely used in the fields of genomics, bioinformatics, and biomedical research, and it is particularly useful for tasks such as identifying genetic markers associated with disease and studying the molecular basis of gene expression. GenePattern is available for use by researchers and scientists around the world. It is distributed under an open-source license, and it can be accessed through the GenePattern website. Operating system: OS X 10.7 and later, Linux Ubuntu, Linux SuSE License: BSD

Operating system: Microsoft Windows License: Proprietary Freeware

MDynaMix is a software tool for modeling and simulation of dynamic systems. It is developed by the s (more)oftware company MDynaMix and is used in a variety of applications, including engineering, science, and education. MDynaMix includes a range of features for creating and analyzing models, including tools for building graphical models, running simulations, and analyzing results. It is used to study the behavior of dynamic systems, such as mechanical systems, electrical systems, and chemical systems. MDynaMix is available for Windows operating systems. It is often used in conjunction with other software tools, such as Matlab, a technical computing software package developed by MathWorks. Operating system: Unix, Linux, Windows License: GPL