Dendroscope

Emergent is a neural simulation software package that is used for modeling and studying the activity (more) of neural systems, such as the brain or individual neurons. It is an open-source software tool that is designed to be a flexible and powerful tool for studying the behavior of complex neural systems. Emergent includes a wide range of features and tools for building and simulating neural models, including support for a variety of neuron and synapse models, as well as tools for visualizing and analyzing the activity of neural networks. It also includes a programming language for creating custom models and algorithms, and it has support for parallel and distributed computing. Emergent is widely used in the fields of neuroscience, artificial intelligence, and cognitive science, and it is available for a variety of platforms, including Windows, Linux, and macOS. It is distributed under the GNU General Public License (GPL). Operating system: Cross-platform License: GPL

SMS (Surface-Water Modeling System) is a software tool for modeling and simulation of surface water  (more)systems. It is developed by the software company Environmental Modeling & Software (EM&S) and is used in a variety of applications, including hydrology, water resources management, and environmental engineering. SMS includes a range of features for creating and analyzing models, including tools for building graphical models, running simulations, and analyzing results. It is used to study the behavior of surface water systems, such as rivers, streams, and lakes, and to predict the impacts of natural and human activities on water resources. SMS is available for Windows operating systems. It is often used in conjunction with other software tools, such as data analysis software and visualization software. Operating system: Microsoft Windows License: Proprietary

CP2K is a software tool for performing atomistic and molecular simulations. It is used to study the  (more)properties of materials, such as their electronic structure, structural stability, and chemical reactivity. CP2K is based on density functional theory (DFT), a computational method for predicting the behavior of electrons in materials based on quantum mechanics. It includes a range of features for performing atomistic simulations, such as calculating energy levels, optimizing structures, and predicting the properties of materials. CP2K is developed by a team of researchers at ETH Zurich in Switzerland and is available for free download for Windows, Linux, and Unix operating systems. It is widely used in research and industry to study the properties of materials and chemical systems. Operating system: Linux, Windows License: GNU General Public License

Transana is a software tool for analyzing and coding multimedia data, such as audio, video, and text (more). It is used in a variety of applications, including social science research, education, and healthcare. Transana includes a range of features for organizing, coding, and analyzing multimedia data, such as tools for transcribing audio and video, creating and managing codebooks, and generating reports. It is used to study the content and meaning of multimedia data, such as conversations, interviews, and observations. Transana is developed by the software company Digital Transana and is available for Windows, macOS, and Linux operating systems. Operating system: Mac OS, Microsoft Windows License: Proprietary, used to be GPL

GENtle is a software tool for molecular biology and genetics research. It is developed by the softwa (more)re company Bioinformatics Solutions and is used to study the structure and function of DNA, RNA, and proteins. GENtle includes a range of features for analyzing and manipulating molecular biology data, such as tools for DNA and protein sequence analysis, primer design, and plasmid map construction. It is used to study the genetic basis of diseases, the evolution of species, and other topics in molecular biology and genetics. GENtle is available for Windows and macOS operating systems. It is often used in conjunction with other software tools, such as sequence alignment software and data analysis software. Operating system: Mac OS X, Windows, Linux License: Free software GPL

RasMol is a computer program that is used to visualize and manipulate molecular structures. It is a  (more)widely used tool in the field of chemistry, and it is particularly useful for studying the structure and properties of proteins and other biological molecules. RasMol allows users to view and analyze the three-dimensional structure of molecules, and it provides a number of features that make it easy to manipulate and analyze the data. Users can rotate and zoom in on molecules, change the display style, and apply various coloring schemes to highlight specific features of the molecule. They can also use RasMol to measure distances, angles, and other structural properties of the molecule. RasMol is available as a free, open-source program, and it is widely used in academia, research, and industry. It is compatible with a number of operating systems, including Windows, macOS, and Linux. Operating system: Unix, Windows License: GPL