Neural Network Intelligence

FHI-aims (Fritz Haber Institute ab initio molecular simulations) is a software tool for performing q (more)uantum mechanical calculations and simulations of materials and molecules. It is developed by the software company Fritz Haber Institute (FHI) and is used in a variety of applications, including chemistry, physics, and materials science. FHI-aims includes a range of features for calculating and analyzing the properties of materials and molecules, such as tools for predicting the electronic structure, bonding, and reactivity of systems. It is used to study the physical and chemical properties of materials and to design new materials and molecules. FHI-aims is available for Windows, macOS, and Linux operating systems. It is often used in conjunction with other software tools, such as data analysis software and visualization software. Operating system: Linux License: Academic / Commercial

GenePattern is a software platform for analyzing and interpreting genomic data. It is a web-based to (more)ol that provides a range of tools and algorithms for tasks such as gene expression analysis, DNA sequence analysis, and genetic variation analysis. GenePattern is designed to be a user-friendly platform for working with large-scale genomic data, and it includes features such as a graphical user interface (GUI) for accessing tools and data, as well as support for command-line interface (CLI) and programmatic access to tools and data. It is widely used in the fields of genomics, bioinformatics, and biomedical research, and it is particularly useful for tasks such as identifying genetic markers associated with disease and studying the molecular basis of gene expression. GenePattern is available for use by researchers and scientists around the world. It is distributed under an open-source license, and it can be accessed through the GenePattern website. Operating system: OS X 10.7 and later, Linux Ubuntu, Linux SuSE License: BSD

Operating system: Cross-platform License: LGPL

Operating system: Microsoft Windows License: Proprietary Freeware

Coot is a software tool for analyzing and visualizing macromolecular structures, such as proteins an (more)d nucleic acids. It is used in the field of structural biology to study the 3D structure of biological molecules and their interactions with other molecules. Coot includes a range of features for analyzing and manipulating macromolecular structures, including tools for fitting atomic models to electron density maps, visualizing structural data, and identifying and analyzing specific features of the structure. It is developed by the Medical Research Council (MRC) Laboratory of Molecular Biology in Cambridge, UK and is available for free download for Windows, macOS, and Linux operating systems. Coot is often used in conjunction with other software tools, such as the Molecular Graphics and Modelling System (MGMS) or the Protein Data Bank (PDB). Operating system: Windows, Linux, OS X, Unix License: GNU General Public License

FreeFem+ is a free, open-source software tool for numerical simulation and optimization in scientifi (more)c and engineering applications. It is primarily used for solving partial differential equations (PDEs) and optimization problems, and it is particularly well-suited for problems in fluid mechanics, electromagnetism, structural mechanics, and heat transfer. FreeFem+ is based on the Finite Element Method (FEM), which is a numerical technique for solving differential equations by approximating them with piecewise linear functions. The software includes a high-level programming language for defining and solving PDEs and optimization problems, as well as a graphical user interface (GUI) for visualizing and analyzing the results. FreeFem+ is available for Windows, macOS, and Linux, and it can be used on a wide range of problems in scientific and engineering research. It is developed and maintained by a community of volunteers, and it is distributed under the GNU General Public License (GPL). Operating system: Linux, macOS, Microsoft Windows, Solaris License: LGPL version 2.1 or later